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Pumpkin Cream Cheese Muffins

5 from 1 vote
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Amelia Rose
By: Amelia RoseUpdated: Dec 6, 2025
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Tender pumpkin muffins swirled with a silky cream cheese center. A cozy fall bake that balances warm spices with a creamy tang and comes together quickly for brunch or snacks.

Pumpkin Cream Cheese Muffins

This pumpkin cream cheese muffin is one of those recipes that quietly became a family classic the first time I made it. I discovered this combination during a rainy October when I wanted something that tasted like autumn but was quick enough for a weekday breakfast. The crumb is tender and slightly dense in a comforting way, with the canned pumpkin keeping every bite moist. The cream cheese center adds a little bright tang and richness that makes these muffins feel special without adding fuss. I often make a double batch because they vanish fast.

I remember the first time I brought these to a weekend brunch at my sister s house. They emerged from the oven with a light crust and faint crackles of cream cheese showing at the tops. The room filled with warm pumpkin pie spice aromas and everyone lined up for seconds. These muffins are great warm or at room temperature and travel well to potlucks, school lunches, or coffee catch ups. The recipe uses straightforward pantry staples and a small cream cheese topping that elevates the experience without a lot of extra work.

Why You'll Love This Recipe

  • Ready in under 45 minutes, with about 15 minutes active time and 25 minutes baking time so it is perfect for busy mornings or last minute guests.
  • Uses canned pumpkin and common pantry flours so you do not need specialty shopping to make something that tastes restaurant quality.
  • Swirled cream cheese adds a gooey center that lifts these above ordinary muffin recipes while still being easy to portion and serve.
  • Simple technique with only one batter bowl for the wet ingredients and one small bowl for the filling which keeps cleanup minimal.
  • Adaptable for dietary swaps such as using coconut oil and alternative flours to suit preferences and textures.
  • Perfect for brunch, school snacks, seasonal gifts, or freezing for quick breakfasts during the week.

I first experimented with the swirl to cut through the pumpkin richness and found family members fighting over the ones with the most cream cheese. Over time I tuned the spice blend and the oil ratio so the crumb stayed moist without feeling greasy. The combination of white whole wheat and unbleached all purpose flour gives a tender but structured texture so the muffins hold up well to spreading and wrapping.

Ingredients

  • White whole wheat flour Use 1/2 cup of King Arthur white whole wheat flour for a mild whole grain flavor and lighter crumb. This flour adds fiber without the heavy texture of regular whole wheat.
  • Unbleached all purpose flour Use 3/4 cup of King Arthur unbleached all purpose flour to give structure and tenderness. Unbleached flour performs better in quick bakes for a soft crumb.
  • Raw sugar 3/4 cup of raw sugar provides caramel notes and pairs beautifully with pumpkin spices. You can substitute granulated sugar one for one if needed.
  • Baking soda 1 teaspoon to help these muffins rise and achieve a light interior. Make sure it is fresh for best lift.
  • Pumpkin pie spice 2 teaspoons for classic autumn warmth. A homemade mix of cinnamon nutmeg ginger and cloves will work fine.
  • Nutmeg and cinnamon Each at 1/4 teaspoon to layer spice and keep the profile balanced without overwhelming the pumpkin.
  • Salt 1/4 teaspoon to enhance all the flavors and keep sweetness from tasting flat.
  • Canned pumpkin 1 and 1/2 cups of pure pumpkin puree, not pumpkin pie filling. This keeps moisture and pumpkin flavor concentrated.
  • Coconut oil 2 tablespoons melted coconut oil for tender crumbs and a hint of tropical depth. Use neutral oil if you prefer no coconut note.
  • Egg 1 large egg to bind and provide lift.
  • Vanilla extract 1 and 1/2 teaspoons for aromatic sweetness.
  • Baking spray to grease the paper liners and ensure easy removal.
  • Cream cheese topping 5 ounces of 1/3 less fat cream cheese, 2 tablespoons raw sugar, 1 large egg yolk, and 1 teaspoon vanilla extract blended smooth to form the filling that is dolloped on top of each muffin.

Instructions

Preheat and prepare Preheat the oven to 350 degrees Fahrenheit. Line a standard 12 cup muffin tin with paper liners and lightly spray the liners with baking spray so the muffins come out cleanly after baking. Position the rack in the center of the oven for even heat. Combine dry ingredients In a medium bowl whisk together the white whole wheat flour unbleached all purpose flour raw sugar baking soda pumpkin pie spice nutmeg cinnamon and salt until evenly distributed. A wire whisk helps break up any lumps and ensures even spice dispersion. Mix wet ingredients In a large bowl combine the canned pumpkin melted coconut oil large egg and vanilla extract. Beat at medium speed or whisk vigorously until the mixture looks smooth and slightly glossy. Scrape the bowl sides so everything is evenly incorporated. Combine batter Add the dry mixture to the wet mixture and blend at low speed until just combined. Do not over mix. The batter should be thick with no large pockets of flour but small streaks are fine. Over mixing will make the crumb tough. Prepare cream cheese topping In a separate small bowl beat the cream cheese until smooth. Add the raw sugar egg yolk and vanilla and beat until fully combined and silky. The topping should be pourable but not runny so it holds a small mound on top of each muffin. Fill and swirl Divide the pumpkin batter evenly among the prepared muffin cups filling them about two thirds full. Drop approximately 1 tablespoon of the cream cheese topping onto the center of each muffin. Use a toothpick to gently swirl from the edge toward the center creating a marbled effect. Avoid heavy swirling which can cause the topping to sink. Bake Bake on the center rack for 24 to 26 minutes. The muffins are done when a toothpick inserted near but not through the cream cheese comes out clean or with a couple of moist crumbs. The tops will be set and slightly springy to the touch. Cool and serve Let the muffins cool in the tin for about 5 minutes then move them to a wire rack to cool completely. Warm or room temperature is delicious. Store cooled muffins in a covered container in the refrigerator for best freshness when cream cheese is present. Freshly baked pumpkin cream cheese muffins on a cooling rack

You Must Know

  • These muffins keep well refrigerated for up to 4 days because of the cream cheese filling. Bring to room temperature or warm gently before serving.
  • You can freeze the baked muffins in a single layer for up to 3 months. Thaw overnight in the fridge then warm in a 325 degree Fahrenheit oven for 8 to 10 minutes.
  • High in vitamin A from the pumpkin and moderate in sugar so they make a more nourishing snack than many commercial muffins.
  • If you want to make them dairy free swap the cream cheese for a firm vegan cream cheese and understand texture will be a touch different.

My favorite aspect is how the cream cheese creates little pockets of tang that contrast the spiced pumpkin. Family and friends often tell me they prefer these over heavier coffee cake because they are easier to eat on the go yet still feel indulgent.

Storage Tips

Store cooled muffins in an airtight container in the refrigerator for up to four days because of the cream cheese component. To freeze wrap each muffin individually in plastic wrap then place in a zip top bag or freezer container for up to three months. Thaw in the fridge overnight or at room temperature for a few hours. To refresh from chilled or thawed heat in a 325 degree Fahrenheit oven for 8 to 10 minutes or microwave for 12 to 18 seconds depending on your microwave wattage. Use parchment or paper liners when baking for easier reheating and transport.

Ingredient Substitutions

If you prefer neutral oil use canola or vegetable oil in place of coconut oil. For a gluten free option replace the flours with a one to one gluten free baking blend and add 1 quarter teaspoon xanthan gum if your blend lacks it to help structure. Swap raw sugar for light brown sugar for more caramel notes and slightly moister crumb. To make completely dairy free use a plant based cream cheese alternative but be aware the filling may be softer during baking so reduce the amount by one tablespoon if it looks too loose.

Serving Suggestions

Serve slightly warm with a smear of butter or a dusting of powdered sugar for an elegant brunch presentation. Pair with brewed coffee chai or a spiced latte to match the pumpkin pie spice. For a full brunch menu present these muffins alongside scrambled eggs roasted potatoes and a green salad for balance. Garnish with a small sprinkle of cinnamon or a toasted pepita for texture and a seasonal touch.

Close up of pumpkin muffin with cream cheese swirl

Cultural Background

Pumpkin has long been a staple in North American autumn cooking where it appears in both savory and sweet applications. The mash of pumpkin with warm spices evokes the flavors of traditional pies while the cream cheese addition borrows from Eastern European cheese filling traditions used in sweet pastries. The idea of combining a spiced quick bread with a soft cheese center is a modern adaptation that blends comfort baking with a bakery style presentation.

Seasonal Adaptations

In fall add a tablespoon of maple syrup to the batter for extra autumnal depth. For winter holidays stir in a quarter cup of dried cranberries or chopped toasted pecans to the batter for texture and tartness. In warmer months reduce the spice by half and add a teaspoon lemon zest to the cream cheese topping for a brighter finish.

Meal Prep Tips

To batch prep make the batter and the cream cheese topping the night before and store separately in the refrigerator. In the morning give the batter a quick fold and portion into prepared liners then bake. This cuts active morning time to under 20 minutes. For grab and go breakfasts portion muffins into single serve containers or wrap in parchment with a label noting the bake date. The muffins are freezer friendly and defrost quickly which makes them ideal for weekly meal prep.

These muffins are easy to make your own. Tweak the spice level fold in mix ins or make them gluten free while keeping the same heartwarming flavors. I hope they become a regular in your rotation the way they are in mine.

Pro Tips

  • Do not over mix the batter once the dry ingredients are added to avoid a tough crumb.

  • Chill the batter for 10 minutes if it seems very loose to help the muffins hold shape while baking.

  • Use room temperature cream cheese and beat well to avoid lumps in the topping.

  • Check baking soda for freshness for reliable rise and even texture.

This nourishing pumpkin cream cheese muffins recipe is sure to be a staple in your kitchen. Enjoy every moist, high protein slice — it is perfect for breakfast or as a wholesome snack any time.

Tags

Easy Recipespumpkinmuffinsbreakfastdessertfallrecipe
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Pumpkin Cream Cheese Muffins

This Pumpkin Cream Cheese Muffins recipe makes perfectly juicy, tender, and flavorful steak every time! Serve with potatoes and a side salad for an unforgettable dinner in under 30 minutes.

Servings: 12 steaks
Pumpkin Cream Cheese Muffins
Prep:15 minutes
Cook:25 minutes
Rest Time:10 mins
Total:40 minutes

Ingredients

Batter

Cream Cheese Topping

Instructions

1

Preheat and prepare pan

Preheat oven to 350 degrees Fahrenheit. Line a 12 cup muffin tin with paper liners and lightly spray the liners with baking spray to ensure easy removal.

2

Combine dry ingredients

In a medium bowl whisk together white whole wheat flour unbleached all purpose flour raw sugar baking soda pumpkin pie spice nutmeg cinnamon and salt until evenly combined.

3

Whisk wet ingredients

In a large bowl combine canned pumpkin melted coconut oil large egg and vanilla extract. Beat at medium speed or whisk vigorously until the mixture is smooth and glossy then scrape the sides of the bowl.

4

Mix batter

Add the dry ingredients to the wet mixture and blend at low speed until just combined. Avoid over mixing to keep the crumb tender.

5

Make cream cheese filling

Beat the cream cheese until smooth then slowly blend in raw sugar egg yolk and vanilla extract until silky and lump free.

6

Fill cups and swirl

Spoon the batter into the prepared liners filling about two thirds full. Drop roughly 1 tablespoon of cream cheese mixture onto each muffin and use a toothpick to gently swirl from edge to center for a marbled effect.

7

Bake

Bake on the center rack for 24 to 26 minutes or until a toothpick inserted near the filling comes out clean. Tops should be set and slightly springy.

8

Cool and store

Cool muffins in the tin for five minutes then transfer to a wire rack. Store cooled muffins in an airtight container in the refrigerator for up to four days or freeze for up to three months.

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Nutrition

Calories: 260kcal | Carbohydrates: 30g | Protein:
4g | Fat: 12g | Saturated Fat: 4g |
Polyunsaturated Fat: 2g | Monounsaturated Fat:
5g | Trans Fat: 1g | Cholesterol: 253mg | Sodium:
0mg | Potassium: 953mg | Fiber: 0g | Sugar:
0g | Vitamin A: 577IU | Vitamin C: 3mg | Calcium:
47mg | Iron: 6mg

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Pumpkin Cream Cheese Muffins

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Pumpkin Cream Cheese Muffins

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Food Lover
1 day ago

This recipe looks amazing! Can't wait to try it.

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Hi, I'm Amelia!

Chef and recipe creator specializing in delicious Easy Recipes cooking. Passionate about sharing easy-to-follow recipes that bring families together around the dinner table.

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